Tools‎ > ‎Sequence data‎ > ‎

Get sequence subset

Remove sequences from fasta or fastq file

Seqtk

# extract subset of sequences based on list of IDs in .txt file
seqtk subseq  all_seq.fastq  list_of_subsetIDs.txt  > seq_subset.fastq

# install Seqtk (Linux/Ubuntu)
sudo apt-get install seqtk

Python