Tools‎ > ‎

Genome

Genome download


Genome quality control

→ CheckM
to estimate genome com­pleteness and contamination based on common single-​copy genes

Genome annotation

→ Prokka
Annotation tool for bacterial, archaeal, and viral genomes

→ RAST server
for bacterial and archaeal genomes

→ Maker
eukaryotic and prokaryotic genomes

→ GeneMark
- eukaryotics; prokaryotics; viruses, pages and plasmids
- part of genome annotation pipelines at NCBI

→ MetaGeneMark
gene identification in metagenomic sequences

Pathway / gene / protein  databases


→ KEGG - gene annotation and pathway database
→ KEGG KAAS server - multiple sequence annotation

→ WikiPathways
Community edited pathway database

 → UniProt 
Gene annotation and protein database
Gene annotation and protein database

Converting gene/protein/pathways identifiers


convert UniProt, KEGG, EMBL, RefSeq, ... identifiers

UniProf or NCBI-geneIDs to KEGG


Subpages (1): Prokka