Genome download→ CheckM to estimate genome completeness and contamination based on common single-copy genes
Annotation tool for bacterial, archaeal, and viral genomes
→ Maker→ RAST server for bacterial and archaeal genomes eukaryotic and prokaryotic genomes → GeneMark - eukaryotics; prokaryotics; viruses, pages and plasmids - part of genome annotation pipelines at NCBI → MetaGeneMark
gene identification in metagenomic sequences Community edited pathway database → UniProt Gene annotation and protein database
Gene annotation and protein database convert UniProt, KEGG, EMBL, RefSeq, ... identifiers
UniProf or NCBI-geneIDs to KEGG
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