Public sequences

Public available nucleotide and amino acid sequences

→ NCBI

• Genome sequences

  • • RefSeq - manually selected reference genomes (see FAQ and ftp-download)

    • GenBank - complete set of available reference genomes

• Protein sequences

→ Uniprot

• • Protein sequences and functional information

    • Swiss-Prot - manually reviewed

    • TrEMBL - unreviewed

→ Antibiotic Resistance Database (CARD)

→ Multilocus sequence typing (MLST)

> BLAST > bowtie2